Schedule

Scientific events of general interest on campus

 * Mondays, 12:15pm. KITP Blackboard Lunch. Auditorium
 * Tuesdays, 16:00pm. Colloquium of the Physics Department. Broida Hall
 * Wednesdays, 14:00pm (irregular). KITP Colloquium, Main Seminar Room

Other Events

 * Daily except Tuesdays, 15:15pm, Cookies and Coffee in the Commons Room
 * Every other Monday, 17:00pm, Wine and Cheese in the Commons Room and Courtyard

multi-species sequence data ||  ||
 * ~ __Date__ ||~ __Time__ ||~  __Place*__ ||~ __Speaker__ ||~ __Title__ ||~ __Comments, Links,...__ ||
 * ~ **Week 1** ||~  ||~   ||~   ||~   ||~   ||
 * Monday, Sep15 || 12:15pm || Aud || **Thorsten Emig** || //Blackboard Lunch Seminar// ||  ||
 * || 2:00 pm || SSR || **All participants** || //Organizational Meeting// ||  ||
 * Tue, Sep 15 || 10:00am || SSR || R. Hudson ||  ||   ||
 * Wed, Sep 16 || 10:00am || SSR || R. Hudson/B. Griffiths ||  ||   ||
 * || 13:00pm || Aud || M. Chertkov || Discussion/Seminar on Belief Propagation ||  ||
 * Thu, Sep 17 || 10:00am || SSR || B. Griffiths ||  ||   ||
 * Fri, Sep 18 || 10:00am || Aud || C. Tyler-Smith || Human evolution; The 1000 genome project ||  ||
 * ~ **Week 2** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Sep 22 || 10:00am || Aud || B. Griffiths/R. Hudson || //Ewens sampling formula, a combinatorial derivation; Simulating neutral variation linked to a selected polymorphism// ||  ||
 * || 12:15pm || Aud || M. Kreitman || //Blackboard Lunch Seminar//: Single Nucleotide Polymorphism ||  ||
 * Tue, Sep 23 || 10:00am || SSR || E. Xing || //Computational methods for recombination// ||  ||
 * Wed, Sep 24 || 10:00am || Aud || J. Krug || //Dynamics of adaptation// ||  ||
 * || 14:00pm || MSR || L. Peliti || The Puzzle of the Evolutionary Dynamics of Influenza ||  ||
 * Thu, Sep 25 || 10:00am || SSR || C. Wiggins || //Data, Theory, Model Selection// ||  ||
 * Fri, Sep 26 || 10:00am || Aud || D. Fisher || Dynamics with Multiple Beneficial Mutations ||  ||
 * ~ **Week 3** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Sep 29 || 10:00am || SSR || M. Stoneking || Human evolution ||  ||
 * Mon, Sep 29 || 2:00pm || TBA || T. Nagylaki || Evolution under multiallelic migration-selection models I ||  ||
 * Tu. Sep 30 || 2:00pm || TBA || T. Nagylaki || Evolution under multiallelic migration-selection models II ||  ||
 * Wed, Oct 1 || 10:00am || SSR || R. Burger || Multilocus Migration-Selection Models ||
 * Thu, Oct 2 || 10:00am || SSR || Y. Lou || A semilinear parabolic system for migration and selection ||
 * || 4:00pm || AUD || O. Hallatschek || Journal Club ||
 * Fri, Oct 3 || 10:00am || SSR || D. Petrov || Evidence for recurrent selective sweeps in the fly and human ||  ||
 * ~ **Week 4** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Oct 6 || 10:00am || SSR || M. Przeworski || Recombination in the human ||  ||
 * Tue, Oct 7 || 10:00am || SSR || P. Andolfatto || Constraints and adaptation in the Drosophila genome ||  ||
 * Wed, Oct 8 || 10:00am || SSR || G. Sella || Estimating the frequency of adaptive evolution ||  ||
 * Thu, Oct 9 || 10:00am || SSR || S. Nuzhdin || Genetics of complex traits in Drosophila ||  ||
 * || 4:00 pm || Aud || R. Gutenkunst || Quantitative inference of human demography via the joint SFS ||  ||
 * Fri, Oct 10 || 10:00am || SSR || J. Wall || Human demography and evolution ||  ||
 * ~ **Week 5** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Oct 13 || 10:00am || Aud || J. Comeron || Hill-Robertson effect revisited ||  ||
 * Tue, Oct 14 || 10:00am || SSR || J. Plotkin ||  ||   ||
 * Wed, Oct 15 || 10:00am || Aud || S. Sunyaev || Learning from re-sequencing data: what to do when the $1000 genome arrives? ||  ||
 * Thu, Oct 16 || 10:00am || SSR || J. Gilad ||  ||   ||
 * Fri, Oct 10 || 10:00am || Aud || M. Siegal || Phenotypic robustness and network centrality in yeast ||  ||
 * ~ **Week 6** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Oct 20 || 10:00am || Aud || H. Isambert || Biomolecular networks under duplication-divergence evolution ||  ||
 * || 11:15am || Aud || O. Hallatschek || Evolution at expanding frontiers ||  ||
 * Tue, Oct 21 || 10:00am || SSR || B. Dujon || Genome evolution in yeasts I ||  ||
 * Wed,Oct 22 || 10:00am || Aud || B. Dujon || Genome evolution in yeasts II ||  ||
 * Thu, Oct 23 || 10:00am || SSR || M. Rockman || Empirical Population Genomics of Functional Variants ||  ||
 * Fri, Oct 24 || 10:00am || Aud || E. van Nimwegen || The evolution of gene content and regulatory network structure in bacteria ||  ||
 * ~ **Week 7** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Oct 27 || 10:00am || Aud || M. Nordborg || Adaptive trait variation in Arabidopsis ||  ||
 * Tue, Oct 28 || 10:00am || SSR || A. Jacquier || Defining gene functional modules from genome-wide epistasis networks ||  ||
 * Wed, Oct 29 || 10:00am || Aud || M. Long || Origination of new genes ||  ||
 * Thu, Oct 30 || 10:00am || SSR || M. Long || Genome Evolution ||  ||
 * Fri, Oct 31 || 10:00am || Aud || P. Higgs || Codon Usage in Bacteria and Mitochondria ||  ||
 * ~ **Week 8** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Nov 3 || 10:00am || Aud || E. Betran || Patterns of gene duplication and sex chromosomes evolution ||  ||
 * Tue, Nov 4 || 10:00am || SSR || M. Hahn || Gene gain and loss in mammals ||  ||
 * Wed, Nov 5 || 10:00am || Aud || G. Coop || Geographic patterns and models of selection in humans ||  ||
 * Thu, Nov 6 || 10:00am || SSR || S. Myers || Understanding ancient admixture, and association mapping in admixed populations ||  ||
 * Fri, Nov 7 || 10:00am || Aud || J. Thornton || Evolution of protein structure and function ||  ||
 * ~ **Week 9** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Nov 10 || 10:00am || Aud || J. Fay || Evolution of cis-regulatory binding sites: theory and data ||  ||
 * Tue, Nov 11 || 10:00am ||  ||   ||   ||   ||
 * Wed Nov 12 || 10:00am || Aud || M. Weigt || Inference of spatial details in protein-protein interactions from
 * Th, Nov 13 || 10:00am || SSR || C. Wiuf || Inference in coalescent models: a theoretical overview ||  ||
 * Fr, Nov 14 || 10:00am || Aud || P. Sniegowski || Evolution of mutation rates in asexual populations ||  ||
 * ~ **Week 10** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Nov 17 || 10:00am

12:15am || Aud

Aud || C. Wiuf

M. Mezard || The Coalescent of Rare Alleles

//Blackboard Lunch Seminar:// Information flow on trees, reconstruction...and glasses ||  || Non-equilibrium dynamics of selection and adaptation ||  || M. Luksza || HIV - host co-evolution Evolution of gene expression - a genome wide comparison between human and mouse ||  || 2:00pm || SSR AUD || C. Russell R. Neher || The global circulation of influenza A (H3N2) viruses Modeling epistasis and collective effects of epistatic polymorphisms ||  || 3:30pm || SSR || A. Di Rienzo G. Szollosi & S. Schiffels || Spatially-varying selection in humans Codon Usage Measures Adaptive Evolution in Drosophila ||  || 2:00pm || SSR || S. Rifkin P. Wittkopp || When time and chance happen to worms Connecting intraspecific polymorphism to interspecific divergence: genetics of pigmentation evolution in Drosophila ||  ||
 * Tue, Nov 18 || 10:00am || SSR || W. Watt || Tracing natural selection from molecular to ecological levels ||  ||
 * Wed Nov 19 || 10:00am || Aud || P. Sniegowski || Yeast population genetics ||  ||
 * Th, Nov 20 || 10:00am || SSR || V. Mustonen || From fitness landscapes to seascapes:
 * Fr, Nov 21 || 10:00am || Aud || M. Kreitman || Variation and evolution of pattern formation in Drosophila ||  ||
 * ~ **Week 11** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Nov 24 || 10:00am || Aud || all || Discussion ||  ||
 * Tue, Nov 25 || 10:00am || SSR || K. Bozek,
 * Wed Nov 26 || 10:00am ||  ||   ||   ||   ||
 * Th, Nov 27 || 10:00am ||  ||   ||   ||   ||
 * Fr, Nov 28 || 10:00am ||  ||   ||   ||   ||
 * ~ **Week 12** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Dec 1 || 10:00am ||  || M Lassig || Influenza evolution: A molecular red queen race ||   ||
 * Tue, Dec 2 || 10:00am ||  || T. Leitner || Reconstructing viral phylogenies ||   ||
 * Wed Dec 3 || 10:00am ||  || L. Quintanamurci || Natural selection in the human genome and host-pathogen interactions ||   ||
 * Th, Dec 4 || 10:00am
 * Fr, Dec 5 || 10:00am ||  || L. Barreiro || Widespread Purifying and Local Positive Selection Targeted miRNAs During Human Evolution ||   ||
 * ~ **Week 13** ||~  ||~   ||~   ||~   ||~   ||
 * Mon, Dec 8 || 10:00am
 * Tue, Dec 9 || 10:00am
 * Wed Dec 10 || 10:00am ||  || C. Bustamonte || ...More about selection ||   ||
 * Th, Dec 11 || 10:00am ||  || A. Clark || The strange world of ultra-deep resequencing ||   ||
 * Fr, Dec 12 || 10:00am ||  || J. Novembre || TBA ||   ||

***Aud=Auditorium, SSR=Small Seminar Room, MSR=Main Seminar Room** TOP]